It would not make sense to have have regenerative braking drawing power from the motor
and the throttle trying to send power to the motor at the same time.
It might be possible to override the brake switch function using a suitable electronic circuit to operate a relay which would open the closed brake circuit when the throttle was activated, but this would be very dangerous if the throttle stuck, as applying the brakes with the throttle applied would no longer cut the power to the motor.
I'm not sure how effective the Auto EBS is at slow speeds, but it might be worth enabling the
EBS Auto-Mode and setting the
EBS Auto_Mode Speed (rpm) as low as possible, as this should then cause the EBS to operate as soon as the throttle is released regardless of the actual speed.
It should be possible to have some form of external electrical circuit/switch using an Arduino to monitor the motor rpm from the Hall sensor pulses that would automatically apply the Regen when the motor speed exceeded a predetermined rpm setting to safely limit the top speed of the vehicle. You'll need to do some Googling to see if anything already exists that would be able to perform this function.
Alan