I seem to be having a nearly identical problem with my new build of approximately 3 days.
The kit is a Rear 48v hub with 48v regenerative controller and pedelec (not installed). After initial install of all components, the bike ran fine except for badly adjusted brake pad causing drag. After less than half a mile around the neighborlhood at relatively low speed the unit cut out, then engaged for about 50 yards, then cut out again. After another block or so it cut out again, and then nothing. I returned quickly returned to the garage.
1. I checked all connections and found nothing.
2. Measured voltage from the battery pack (above 49v)
3. There was no measurable voltage going to the hubmotor with throttle ON or OFF.
4. Checked both brake switches (OK!). Disconnected brake switches. Tried again but reponse.
Based on my limited but not non-existent experience with this kind of stuff, I can only assume that somewhere along that first short trip the controller quit functioning. Another helpful member of this forum suggested that the contoller would not go out this quickly, but in my humble experience, this is precisely the point at which you would experience a malfunction. It is doubtful that any of these components where burned in.
I can only conclude that the controller is toast. I have sent an email requesting another controller, but after 3 days, have heard nothing from GM. Funny, that I received an answer to a pre-sale question in one day!
Jon McClain